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Events

Upcoming events hosted by or involving Genetics Otago will be listed here. Please check back regularly for updates. A calendar of events that may be of interest to our members can be found at the bottom of this page and in the sidebar of other pages on this site, please note that this includes events hosted outside of Genetics Otago.

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Career Evening


Unsure what you can do with a Genetics, Biochemistry, Neuroscience or Microbiology background? Come along and hear about some avenues from local graduates and employers.

Who should attend? This event is open to all 300 and 400-level students in Genetics, Biochemistry, Neuroscience and Microbiology, as well as interested postgraduate students. The event has limited spaces, please RSVP by Wednesday 18th September to secure your place at this event.

What the event involves? The evening will begin at 6:00 pm with short presentations from the guest speakers, followed by an opportunity to chat and network with the speakers over pizza. Details of speakers will be published here once confirmed.

Date: 25th September 2024
Time: 6:00 pm – 8:00 pm
Location: BI.G13, Biochemistry Building

Programme
Careers Evening Programme_draft 

Please note that the order of speakers is subject to change

Registration
Registration for this event is via Career Hub, please use the button below to be redirected to the registration page.

Register Now

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Calendar of Events

The below is a calendar of events hosted by GO as well as events hosted by others that may be of interest to our members. If you have an event you would like us to include please contact us here.


Aug
4
Fri
Species-wide genomics of kākāpō provides transformational tools to accelerate recovery @ Online
Aug 4 @ 3:00 pm – 4:00 pm

Species-wide genomics of kākāpō provides transformational tools to accelerate recovery

A reminder about our Genomics Aotearoa seminar, online this Friday, August 4 at 3pm.

We welcome Dr Joseph Guhlin (University of Otago) to talk about Species-wide genomics of kākāpō provides transformational tools to accelerate recovery.

Please invite colleagues to join our genomics community and take part in this seminar. Look forward to seeing you there. Questions and discussions are welcome.

Join from PC, Mac, iOS, or Android:
https://otago.zoom.us/j/97097442106?pwd=RlczU3VCdFBmbmt4Yng4VW5OcHdSdz09

About Joseph
Dr Joseph Guhlin graduated with a PhD in Plant & Microbial Sciences from the University of Minnesota.

Based at the University of Otago, he is working in the Genomics Aotearoa High Quality Genomes and Population Genomics programme. A programmer by trade, he is interested in small pop genomics, high-performance computing, gene family expansion and contractions, and applying machine learning to small populations and genetics.

Aug
9
Wed
Outlier Analysis Workshop @ TBC
Aug 9 @ 10:00 am – Aug 10 @ 4:00 pm

This in-person workshop is delivered by Genomics Aotearoa and NeSI, and will be taught over two consecutive days on 9-10 August 2023 from 10am-4pm NZT. It is for New Zealand researchers interested in signals of selection in genomes.

Sign up to this workshop at Eventbrite.

The focus of this workshop is on identifying signals of selection in an example genome using the outlier analysis method. Outlier analysis assumes that the majority of the genome is under neutral selection and some loci will appear as outliers relative to this background.

This lesson assumes learner has no prior experience with the tools covered in the workshop. However, learners are expected to have some familiarity with biological concepts, including the concept of selection. You are expected to have some familiarity with both the R programming language and with basic command line (bash). If you need to refresh, please revise the material in our previous workshops on R and bash.

We encourage you to bring your own data! For participants who do not have their own data, a group dataset is available and will be used by the instructors during the examples.

During this workshop you will:
Download example genomic data (or prepare your own).
Use the PCAdapt tool to identify outlier loci within a genome.
Use VCFtools to identify outlier SNPS in population comparisons.
Use Bayescan to identify outlier SNPS based on allele frequencies.
Relate identified SNPS to phenotypic variation.
Compare the results of the different methods and discuss the results.
Setup
This is an in-person, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Tyler McInnes
Training Coordinator, Genomics Aotearoa
www.genomics-aotearoa.org.nz

Aug
10
Thu
Webinar: 3D Genomics Experimental Considerations @ Online
Aug 10 @ 3:00 pm – 4:00 pm

Webinar: 3D Genomics Experimental Considerations

Aug 10, 2023 3:00 PM (Auckland)

Join us for an insightful talk on 3D Genomics, where we will walk you through what is involved in designing and running a 3D Genomics experiment in the lab, sharing tips and best practices. We will also highlight how to QC the library, and what resources are available to navigate data processing. There will also be an opportunity to ask questions to our expert scientist.

What you’ll learn:

  • How to design a 3D Genomics experiment.
  • What is involved in running a 3D Genomics experiment in the lab.
  • How to navigate data processing and QC analysis.

Speaker: Myriam El Khawand, Ph.D. 

Senior Customer Success Scientist

Dovetail Genomics, part of Cantata Bio

DTG Webinar_10 Aug

Aug
21
Mon
Indigidata Aotearoa Network Launch
Aug 21 @ 9:00 am – Aug 24 @ 5:00 pm

There are 20 fully funded positions available on the program.

The program is open to Māori (tauira, kaitiaki, kaipakihi) who want to better understand the opportunities and challenges associated with māori data science, māori data sovereignty, as well as key technical, cultural and ethical issues.

Applications will be considered from university students in any discipline as well as people with strong iwi, community or business background.

Applications will close Sunday 16 July 2023.
https://www.indigidataaotearoa.com/

Aug
30
Wed
Unravelling Gene Regulation with the Dovetail Pan Promoter Panel @ Online
Aug 30 @ 3:00 pm – 5:00 pm

Unravelling Gene Regulation with the Dovetail Pan Promoter Panel

Advancements in genomics have revolutionized our understanding of gene regulation, paving the way for ground-breaking discoveries in various fields, from developmental biology to disease research. At the forefront of this transformative landscape is the Dovetail Pan Promoter Panel, a genomics tool designed to unravel the intricacies of gene regulation.
In this seminar, we invite you to embark on a journey into the world of regulatory genomics and explore the power of the Dovetail Pan Promoter Panel. Led by renowned experts in the field, this seminar will delve into the unparalleled capabilities of the panel and its potential to unlock the hidden secrets of gene expression.

Date: 30th August, 2023
Time:3:00 PM – 5:00 PM (Auckland, NZ)

Speaker 1: Professor Yasuhiro Murakawa
Kyoto University Institute for Advanced Study (KUIAS)
Dissecting human disease pathways using high-resolution chromatin contact maps
Large-scale genome-wide association studies (GWAS) have yielded an increasing number of disease-associated genomic loci. However, the functional interpretation still largely remains unclear. Recently, it has become apparent that disease-associated genetic variants are often found within enhancers. Enhances act to strongly enhance the expression of their target genes in a cell-type specific fashion, by physically associating with their promoters. We have developed a 5’-end single-cell RNA sequencing approach to comprehensively map active enhancers from heterogeneous helper T cells. By integrating with GWAS datasets, we identified hundreds of human enhancers associated with autoimmune diseases. To gain important clues to human disease pathways, here we used Micro-C as well as promoter-capture Micro-C, methods that can analyze chromatin interactions with super-high resolution. We systematically identified target genes of these enhancers, revealing novel human disease molecular mechanisms. In sum, we provide a general framework to investigate molecular mechanisms underlying human diseases.

Speaker 2: Myriam Elkhawand, Customer Success Manager, Dovetail Genomics
Setting up the Dovetail® Pan Promoter Assay in the lab
In this second talk, Myriam will delve into the details of Dovetail Pan Promoter protocol and library quality control measures that play a pivotal role in assessing the success of the assay. She will discuss best practices in carry out the assay, library QC, emphasizing the importance of stringent quality standards for reliable data analysis. She will also share the analysis pipeline for Dovetail Pan Promoter panels.

Pan Promoter Webinar_30 Aug

Aug
31
Thu
Nanopore Day, Queenstown 2023 @ Queenstown
Aug 31 @ 9:00 am – 5:00 pm

Nanopore Day, Queenstown 2023

Date: Thursday 31st August 2023
Venue: Queenstown, New Zealand
Time: 9:00 – 17:00

Hear about the latest technical updates for Oxford Nanopore Technologies as well as talks from local scientists about their latest work using nanopore technology.

There will also be an opportunity to submit questions throughout the talks, which will be answered in the Q&A sessions following each presentation.

Please note that this is an in-person event.

There is no delegate fee for this event, but registration is required at https://nanoporetech.com/event/NanoporeDayQueenstown

Your place at this event will be confirmed via email from events@nanoporetech.com.

Nanopore Day, Queenstown 2023 @ Crowne II room, Crowne Plaza Queenstown Hotel
Aug 31 @ 11:00 am – 5:30 pm
Sep
5
Tue
The annual Metagenomics Summer School @ University of Auckland City Campus
Sep 5 – Sep 8 all-day

The Environmental Microbiomes team at Genomics Aotearoa is hosting the annual Metagenomics Summer School once more.

This practical, hands-on workshop focuses on prokaryotic metagenomics. It aims to guide learners through the process of analysing metagenomic sequence data, from metagenomic read sequences to curated metagenome-assembled genomes paired with downstream data analyses and visualisation in R. It also includes the following lessons:

Introduction to Bash shell and scripting (pre-workshop session)
Pragmatic considerations during experiment/sampling planning and decision-making (e.g., how much sequence data do I need? What are the approaches to analysing the data I have?)
Best practices in handling and processing metagenomic data
Viral genome prediction from metagenomic assemblies

This in-person workshop will be held at the University of Auckland, City Campus, from 5th to 8th September 2023. See our Metagenomics Summer School poster.

We invite learners of all bioinformatics skill levels to register their interest here.

Jian Sheng Boey
Genomics Aotearoa Bioinformatics Training Coordinator
jian.sheng.boey@auckland.ac.nz

Sep
7
Thu
Open symposium – molecular tools applied to molluscs @ Online
Sep 7 @ 12:00 pm – 1:40 pm

Join the Malacological Society of Australasia on September 7th, from 12 to 1:40pm (New Zealand time) for an enlightening open online symposium on molecular tools applied to molluscs! We will hear from AP Claudio González Wevar, AP Felipe Aguilera, and DP Hamish Spencer on the application of these tools to very different aspects of malacology. The symposium is free of change, just RSVP to receive a Zoom link. More information can be found on our website.

MSA_symposium

Sep
21
Thu
Intermediate R: Advance your skills with the R programming language @ Online
Sep 21 @ 10:00 am – 4:00 pm

This online workshop is hosted by Genomics Aotearoa and NeSI and is for New Zealand researchers interested in progressing their skills with the R programming language.

This is an intermediate workshop, please check you meet the prerequisites: Attendees must have introductory knowledge of R and be well versed in tidyverse (Intro to R + supplementary materials in that workshop). We expect that you will either have completed our Introduction to R workshop or have sufficient experience of your own.

Some of the topics covered in the workshop are:

  • Introduction to relational data and the join function.
  • Working with regular expressions and functions from the stringr package.
  • Writing custom functions, working with conditional statements.
  • ‘Defensive programming’.
  • Iterations – for loops, and map_*() functions.
  • The importance of data structure in R.

Setup: This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.