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Events

Upcoming events hosted by or involving Genetics Otago will be listed here. Please check back regularly for updates. A calendar of events that may be of interest to our members can be found at the bottom of this page and in the sidebar of other pages on this site, please note that this includes events hosted outside of Genetics Otago.

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Career Evening


Unsure what you can do with a Genetics, Biochemistry, Neuroscience or Microbiology background? Come along and hear about some avenues from local graduates and employers.

Who should attend? This event is open to all 300 and 400-level students in Genetics, Biochemistry, Neuroscience and Microbiology, as well as interested postgraduate students. The event has limited spaces, please RSVP by Wednesday 18th September to secure your place at this event.

What the event involves? The evening will begin at 6:00 pm with short presentations from the guest speakers, followed by an opportunity to chat and network with the speakers over pizza. Details of speakers will be published here once confirmed.

Date: 25th September 2024
Time: 6:00 pm – 8:00 pm
Location: BI.G13, Biochemistry Building

Programme
Careers Evening Programme_draft 

Please note that the order of speakers is subject to change

Registration
Registration for this event is via Career Hub, please use the button below to be redirected to the registration page.

Register Now

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Calendar of Events

The below is a calendar of events hosted by GO as well as events hosted by others that may be of interest to our members. If you have an event you would like us to include please contact us here.


Apr
19
Fri
Introduction to Flow Cytometry Webinar @ Online
Apr 19 @ 9:00 am – 10:00 am
The Otago Micro and Nanoscale Imaging – Flow Cytometry Unit, in conjunction with Mediray and BioLegend, invites you to an Introduction to Flow Cytometry Webinar. This webinar will be in two parts and cover the following:
  • Introduction to spectral and traditional flow cytometry and data analysis (Session 1)
  • Considerations for Spectral Flow Cytometry Sample Preparation (Session 1/2)
  • Designing and optimising a multi-colour panel (Session 2)
Webinar time: 9:00 am to 10:00 am
Webinar dates are:
Note! Calendar links have been updated to include Microsoft Teams Meeting ID and Password as well.
Meeting ID: 215 871 135 447
Passcode: tPgUCh
Meeting ID: 435 413 551 830
Passcode: 6sA2Np
May
1
Wed
Genomics Aotearoa Early Career Researcher meeting @ Wellington
May 1 @ 8:00 am – May 2 @ 5:00 pm

Genomics Aotearoa is again holding its annual meeting of postdocs and early career researchers, organised by Training Coordinator Tyler McInnes. This year’s meeting in Wellington on May1-2 spans two days and includes a diverse spread of workshops and networking events.

 

More details to come.

 

May
8
Wed
Genomics Aotearoa: Single-Cell RNA-seq Analysis Workshop @ Online
May 8 @ 9:00 am – 1:00 pm

This workshop, taught by Professor Mik Black, will introduce skills and tools required for the analysis of single-cell RNA-seq data (scRNA-seq data) in R. The workshop will be taught online over four half-days, on May 8th, 9th, 15th and 16th  (9am – 1pm). You should attend all 4 sessions.

This is an advanced workshop which requires an intermediate level of R knowledge and experience. To participate in this workshop you must have either completed the Genomics Aotearoa Intermediate R workshop, or have an equivalent level of experience (e.g., be a semi-regular R user). Because of the complexity of this workshop we will not have the time or resources to solve coding errors. However, the focus of this workshop will be on the concepts and discussion of the statistical methodology rather than your ability to code quickly.

Because we expect a high level of interest in this workshop and we have limited spaces, we are inviting expressions of interest no later than Friday April 26th and will select a group of attendees based on needs and experience. We will endeavour to maximise the overall positive impact on research in Aotearoa and distribute this training as fairly as possible. You will be advised whether you are able to attend the training by end of day Monday April 29th

If we are not able to offer you a space in this training, you will be kept informed about future options for scRNA-seq training.

What will this workshop cover?

  • Alignment and feature counting with Cell Ranger (briefly).
  • QC and exploratory analysis.
  • Normalisation.
  • Sctransform: Variant Stabilising transformation.
  • Feature selection and dimensionality reduction.
  • Batch correction and data set integration.
  • Clustering.
  • Identification of cluster marker genes.
  • Differential gene expression analysis.
  • Differential abundance.

*Note that some of this material may be mentioned only briefly due to time constraints, in which case you will be pointed towards supplementary material for self-guided learning.

If you have any questions about this workshop, please contact Genomics Aotearoa Training Coordinator Dr Tyler McInnes (tyler.mcinnes@otago.ac.nz).

May
9
Thu
Genomics Aotearoa: Single-Cell RNA-seq Analysis Workshop @ Online
May 9 @ 9:00 am – 1:00 pm

This workshop, taught by Professor Mik Black, will introduce skills and tools required for the analysis of single-cell RNA-seq data (scRNA-seq data) in R. The workshop will be taught online over four half-days, on May 8th, 9th, 15th and 16th  (9am – 1pm). You should attend all 4 sessions.

This is an advanced workshop which requires an intermediate level of R knowledge and experience. To participate in this workshop you must have either completed the Genomics Aotearoa Intermediate R workshop, or have an equivalent level of experience (e.g., be a semi-regular R user). Because of the complexity of this workshop we will not have the time or resources to solve coding errors. However, the focus of this workshop will be on the concepts and discussion of the statistical methodology rather than your ability to code quickly.

Because we expect a high level of interest in this workshop and we have limited spaces, we are inviting expressions of interest no later than Friday April 26th and will select a group of attendees based on needs and experience. We will endeavour to maximise the overall positive impact on research in Aotearoa and distribute this training as fairly as possible. You will be advised whether you are able to attend the training by end of day Monday April 29th

If we are not able to offer you a space in this training, you will be kept informed about future options for scRNA-seq training.

What will this workshop cover?

  • Alignment and feature counting with Cell Ranger (briefly).
  • QC and exploratory analysis.
  • Normalisation.
  • Sctransform: Variant Stabilising transformation.
  • Feature selection and dimensionality reduction.
  • Batch correction and data set integration.
  • Clustering.
  • Identification of cluster marker genes.
  • Differential gene expression analysis.
  • Differential abundance.

*Note that some of this material may be mentioned only briefly due to time constraints, in which case you will be pointed towards supplementary material for self-guided learning.

If you have any questions about this workshop, please contact Genomics Aotearoa Training Coordinator Dr Tyler McInnes (tyler.mcinnes@otago.ac.nz).

May
15
Wed
Genomics Aotearoa: Single-Cell RNA-seq Analysis Workshop @ Online
May 15 @ 9:00 am – 1:00 pm

This workshop, taught by Professor Mik Black, will introduce skills and tools required for the analysis of single-cell RNA-seq data (scRNA-seq data) in R. The workshop will be taught online over four half-days, on May 8th, 9th, 15th and 16th  (9am – 1pm). You should attend all 4 sessions.

This is an advanced workshop which requires an intermediate level of R knowledge and experience. To participate in this workshop you must have either completed the Genomics Aotearoa Intermediate R workshop, or have an equivalent level of experience (e.g., be a semi-regular R user). Because of the complexity of this workshop we will not have the time or resources to solve coding errors. However, the focus of this workshop will be on the concepts and discussion of the statistical methodology rather than your ability to code quickly.

Because we expect a high level of interest in this workshop and we have limited spaces, we are inviting expressions of interest no later than Friday April 26th and will select a group of attendees based on needs and experience. We will endeavour to maximise the overall positive impact on research in Aotearoa and distribute this training as fairly as possible. You will be advised whether you are able to attend the training by end of day Monday April 29th

If we are not able to offer you a space in this training, you will be kept informed about future options for scRNA-seq training.

What will this workshop cover?

  • Alignment and feature counting with Cell Ranger (briefly).
  • QC and exploratory analysis.
  • Normalisation.
  • Sctransform: Variant Stabilising transformation.
  • Feature selection and dimensionality reduction.
  • Batch correction and data set integration.
  • Clustering.
  • Identification of cluster marker genes.
  • Differential gene expression analysis.
  • Differential abundance.

*Note that some of this material may be mentioned only briefly due to time constraints, in which case you will be pointed towards supplementary material for self-guided learning.

If you have any questions about this workshop, please contact Genomics Aotearoa Training Coordinator Dr Tyler McInnes (tyler.mcinnes@otago.ac.nz).

May
16
Thu
Genomics Aotearoa: Single-Cell RNA-seq Analysis Workshop @ Online
May 16 @ 9:00 am – 1:00 pm

This workshop, taught by Professor Mik Black, will introduce skills and tools required for the analysis of single-cell RNA-seq data (scRNA-seq data) in R. The workshop will be taught online over four half-days, on May 8th, 9th, 15th and 16th  (9am – 1pm). You should attend all 4 sessions.

This is an advanced workshop which requires an intermediate level of R knowledge and experience. To participate in this workshop you must have either completed the Genomics Aotearoa Intermediate R workshop, or have an equivalent level of experience (e.g., be a semi-regular R user). Because of the complexity of this workshop we will not have the time or resources to solve coding errors. However, the focus of this workshop will be on the concepts and discussion of the statistical methodology rather than your ability to code quickly.

Because we expect a high level of interest in this workshop and we have limited spaces, we are inviting expressions of interest no later than Friday April 26th and will select a group of attendees based on needs and experience. We will endeavour to maximise the overall positive impact on research in Aotearoa and distribute this training as fairly as possible. You will be advised whether you are able to attend the training by end of day Monday April 29th

If we are not able to offer you a space in this training, you will be kept informed about future options for scRNA-seq training.

What will this workshop cover?

  • Alignment and feature counting with Cell Ranger (briefly).
  • QC and exploratory analysis.
  • Normalisation.
  • Sctransform: Variant Stabilising transformation.
  • Feature selection and dimensionality reduction.
  • Batch correction and data set integration.
  • Clustering.
  • Identification of cluster marker genes.
  • Differential gene expression analysis.
  • Differential abundance.

*Note that some of this material may be mentioned only briefly due to time constraints, in which case you will be pointed towards supplementary material for self-guided learning.

If you have any questions about this workshop, please contact Genomics Aotearoa Training Coordinator Dr Tyler McInnes (tyler.mcinnes@otago.ac.nz).

May
31
Fri
SEMINAR: Epigenetic clocks for age prediction @ Online
May 31 @ 3:00 pm – 4:00 pm

A reminder about this week’s Genomics Aotearoa seminar, online Friday, May 31 at 3pm.

We welcome Dafni Anastasiadi (Plant and Food Research). Dafni will be talking on Epigenetic clocks for age prediction.

Please invite colleagues to join our genomics community and take part in this seminar. Look forward to seeing you there. Questions and discussions are welcome.

Join from PC, Mac, iOS, or Android:
https://otago.zoom.us/j/97097442106?pwd=RlczU3VCdFBmbmt4Yng4VW5OcHdSdz09

About Dafni
Dafni Anastasiadi is a scientist at Plant and Food Research, Nelson. Her research interests focus on the role of epigenetics in eco-evolutionary processes using marine species as models. Her work has produced results with far-reaching implications in the epigenetics field, including the first epigenetic clock to accurately predict age in fish.

Jun
5
Wed
WORKSHOP: Reproducible Bioinformatics with Nextflow and nf-core @ Online
Jun 5 @ 10:00 am – 4:00 pm

WORKSHOP: Reproducible Bioinformatics with Nextflow and nf-core
This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am to 4:00pm NZT on Wednesday the 5th of June, 2024, and is for New Zealand researchers interested in learning to use Nextflow.

Register for Reproducible Bioinformatics with Nextflow and nf-core

Nextflow is a management software system which facilitates the writing of scalable and reproducible scientific workflows. As a management system, Nextflow will simplify the development, monitoring, execution and sharing of pipelines. Using Nextflow will improve the reproducibility, portability, and run time of tasks.

Nextflow can integrate pipelines written in common scripting languages such as R and Python and couple these with environment management systems such as Docker, Singularity and Conda. Nextflow uses Domain Specific Language (DSL) which makes running workflows on cloud or high-performance computing (HPC) infrastructure easy.

This workshop will also introduce nf-core: a community-driven repository of peer-reviewed best practice analysis pipelines written in Nextflow.

This workshop is comprised of three sections:
Section 1
– An introduction to Nextflow.
– Useful terminology.
– Working in the Nextflow environment.
Section 2
– An introduction to nf-core – a repository of existing pipelines.
– General structure of a pipeline.
– Running and customising your first pipeline.
Section 3
– Customising and configuring pipelines.
– Metrics and shareable reports.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI OpenOnDemand training environment – there is no need to install any software for this workshop. Instructions on how to access the training platform will be sent out with the confirmation letter to registrants.
Participants must have their own laptops and plan to participate actively. You will require a working web browser.
Prerequisites: You must have basic command line (Bash) skills to participate in this workshop.
If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Jul
17
Wed
Genomics Aotearoa Workshop: Introduction to R (online) @ Online
Jul 17 @ 10:00 am – 4:00 pm

This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am-4:00pm NZT on Wednesday the 17th of July, 2024, and is for New Zealand researchers interested in learning R. This workshop functions as a prerequisite for the RNA-seq Data Analysis workshop, and the material provides a basis for many workflows in R.

Some of the topics covered in the workshop are:

– An introduction to R and RStudio.

– R basics: The R language, reading data into R, storing data as objects.

– R packages.

– Publication-quality data presentation using ggplot2.

– Knitr: keep track of workflow and produce easy-to-follow reports of your work.

– Where to get more help when you are ready to do more.

We assume the learner has no prior experience with the tools covered in the workshop. However, learners are expected to have some familiarity with biological concepts.

Setup

This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

The material for this workshop can be previewed here:

https://genomicsaotearoa.github.io/Introduction-to-R/

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Jul
19
Fri
Genomics Aotearoa Seminar: Scott V. Edwards @ Online
Jul 19 @ 12:00 pm – 1:00 pm

We are delighted to invite you the Genomics Aotearoa seminar series.

Professor Scott V. Edwards will be presenting a talk on Peering into the lives of the little bush moa (Anomalopteryx didiformis) and relatives through their genomes

Because of time zones, this seminar will be held earlier than usual.
Please join us on Friday, July 19th at 12pm (NZT).

Scott V. Edwards is Alexander Agassiz Professor of Zoology and Curator of Ornithology in the Museum of Comparative Zoology and is currently Chair of the Department of Organismic and Evolutionary Biology at Harvard University. Scott is an evolutionary biologist, with diverse interests in molecular evolution, phylogenetics, comparative genomics and population genetics. His research uses birds as model systems, focusing on their evolutionary history, phylogeography and genome evolution. His current work focuses on using phylogenetic trees and statistical models to link genomic and phenotypic variation. Scott has served as President of the Society for the Study of Evolution, and the Society of Systematic Biologists, and has served on the Advisory Boards of the National Museum of Natural History (Smithsonian) and the Cornell Lab of Ornithology. In 2015 he gave a multi-city lecture tour of Aotearoa, New Zealand, focusing on the imprints of dinosaur ancestry on the genomes of modern birds. From 2013-2015 Scott served as Division Director of the Division of Biological Infrastructure at the US National Science Foundation, where he facilitated funding in areas such as undergraduate research experiences, supporting biological collections and major infrastructure and bioinformatics. He also has led efforts to increase the diversity of undergraduates in evolutionary biology and biodiversity science.

Questions and discussions are welcome. We encourage you to invite colleagues to join our genomics community and take part in this seminar. Look forward to seeing you there.

Join from PC, Mac, iOS, or Android:
https://otago.zoom.us/j/97097442106?pwd=RlczU3VCdFBmbmt4Yng4VW5OcHdSdz09