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Events

Upcoming events hosted by or involving Genetics Otago will be listed here. Please check back regularly for updates. A calendar of events that may be of interest to our members can be found at the bottom of this page and in the sidebar of other pages on this site, please note that this includes events hosted outside of Genetics Otago.

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GO Annual Symposium – POSTPONED


As usual, the Symposium will highlight the fantastic research being done by GO members from around the country through presentations, posters and awards.

Date: New date TBC (tentatively 20th February 2025)
Time: 9:00 am – 5:00 pm
Venue: TBC

Programme
A draft programme will be available here soon.

Registration
Registration for this event will open closer to time.

Registration Fee
Due to budget constraints, we will be charging a $50 per person registration fee for all attendees to subsidise the costs associated with the Symposium. We have received confirmation that this registration fee can be paid from S accounts, and if you are in a position to make a donation on top of this fee, we would gladly receive it. However, we do not want the payment to be a barrier to attendance, so if you are not in a position to make a payment, please contact us go@otago.ac.nz.

Payment Methods
Payments from an S account (or other University account) can be journaled to Genetics Otago account GL.10.LH.A14.2541 via your finance associate. Please include the surname(s) of the registrants that the payment covers in the narration.

If you need to make payment using funds from outside the University this can be arranged via the Cashier’s Office. Please contact us for details (go@otago.ac.nz).

Awards
The Annual Genetics Otago Awards including The Genetics Otago Award, Outstanding Mentor Awards, Student Supervisor Award, Publication Awards, Poster Awards and Science Communication Prize will be presented at the conclusion of the Symposium and nominations for these are now open.

All award nominations should be submitted by email to go@otago.ac.nz.

Full details of the awards can be found here: Award Details.


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Oxford Nanopore Technology Workshop

Join us at Ōtākou Whakaihu Waka, Dunedin, for a one day Oxford Nanopore Technology symposium. This event, jointly hosted by Genomics Aotearoa and the Genetics Otago ONT hub, will feature research talks highlighting different ONT use cases, a technical sequencing demonstration and an EPI2ME workshop.

This is an in-person event being held on Friday, December 6th at the Ōtākou Whakaihu Waka / University of Otago campus.

Registration for this event is free of charge.

Register Now

This event is sponsored by ONT, and is supported by the Otago Genomics Facility.

Contact tyler.mcinnes@otago.ac.nz for any queries.


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CRISPR Workshop

This event is designed to cater to the diverse community of researchers at the University of Otago who are using or interested in using the CRISPR-Cas diagnostics toolkit. We warmly welcome everyone to attend.
For the workshop, you will need a laptop with either a macOS or a Windows operating system (with Windows Linux subsystem installed). Optionally, it would be advantageous if you have Geneious Prime software installed (a free trial time can be obtained on the official website)

Date: Wednesday 13th December 2024
Time: 9:00 am – 2:00 pm
Venue: Hunter Centre, Room 1.18
Programme: CRISPR-Dx Programme

Please register your attendance using the button below. The workshop will only go ahead if >10 people register, with a cap limit of 20. A final decision will be delivered on December 4th if it goes ahead with the corresponding detailed programme.

Register Now


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Calendar of Events

The below is a calendar of events hosted by GO as well as events hosted by others that may be of interest to our members. If you have an event you would like us to include please contact us here.


Nov
23
Thu
Causal Inference workshop
Nov 23 – Nov 24 all-day

Causal Inference workshop – 23rd and 24th November 2023
This in-person, two-day Causal Inference workshop presented by Professor Michael Hudgens, Professor of Biostatistics and Chair of the Department of Biostatistics UNC-Chapel Hill, on the Thursday and Friday after the conference.
Target audience: Health researchers, epidemiologists, biostatisticians

Please refer to the attached posters for more details.
Causal Inference workshop Poster – Nov 2023

Kindly note, that you need to register for the Workshop. The early bird registration date has been extended to Sunday, 15th October 2023.

FNA Perth 2023 @ Kim Beazley Lecture Theatre
Nov 23 – Nov 24 all-day

The Symposium “Functional Nucleic Acids: From Laboratory to Targeted Molecular Therapy” will be held on 23-24 November 2023 at Murdoch University Campus in Perth, Australia.

Don’t miss your chance to hear from global and industry pioneers in RNA Therapeutics at the 3rd International Symposium on Functional Nucleic Acids 23-24 November 2023 at Murdoch University, Perth.

For just $275.00(AUD) or a heavily discounted student rate of $75.00(AUD) you can hear the latest updates from around the world and build your networks.

See the attachment for announcement of Keynote speakers with more exciting speakers still to come. Your name could appear alongside these industry greats when you submit your abstract now.

Abstract submission deadline:
5pm Monday 30 October: Oral or Poster presentation.
Submit an abstract to be considered for an oral or poster.
Guidelines and submission details can be found on the website.
Please Note: Registration is required to submit an abstract.

We look forward to seeing you in Perth in November – REGISTER NOW!

FNA Keynote speakers 2023[81]

Nov
27
Mon
Otago Bioinformatics Spring School @ University of Otago, Dunedin, New Zealand
Nov 27 – Dec 1 all-day

Hosted at the University of Otago, the Bioinformatics Spring School 2023 is a week long training event for researchers, supported by Genomics Aotearoa and the New Zealand eScience Infrastructure (NeSI). This event is primarily targeted at researchers and students based in Aotearoa New Zealand. International applications will be considered but will need to be able to attend in-person.

Expressions of interest applications are now open and will close midnight, Friday 29th September 2023.

Full Details: https://otagobioinformaticsspringschool.github.io/2023/

Feb
7
Wed
eResearch NZ 2024 conference @ Intercontinental Wellington.
Feb 7 – Feb 9 all-day

7-9 February 2024 | Wellington
eResearch NZ is the leading conference for the research community in Aotearoa, New Zealand. Each year, it brings people together to connect, converse, and share their latest ideas and innovations.

In 2024, we’ll be hosting the event in Wellington. Our strategic theme is He Moana Pukepuke e Ekengia e te Waka | Navigating an evolving eResearch landscape

Together with the research community, we’ll be showcasing new innovations, technology and research while helping each other navigate the challenges in our changing field.

eResearch NZ is a collaborative initiative organised by REANNZ, NeSI and Genomics Aotearoa with the support of the wider community.

Feb
14
Wed
Genomics Aotearoa Training: Introduction to the Command Line @ Online
Feb 14 @ 10:00 am – 4:00 pm
Introduction to the Command Line
This online workshop will be taught on Wednesday 14th of February, 2024 10:00am-4:00pm NZT and is for New Zealand researchers interested in learning to use the command line. The focus of this workshop is on working with the command line, also called The Shell.

Some of the topics covered in this workshop are:

  • An introduction to the Shell, including why this is such a powerful tool.
  • File navigation, how to navigate directories.
  • How to interact with files – copy or rename files in bulk. Automation reduces user error and saves time.
  • Redirection: passing information from one command to another to create useful chains of commands.
  • Writing scripts which can be executed to quickly and easily reproduce analyses.

This lesson assumes learner has no prior experience with the tools covered in the workshop.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants. The material for this workshop can be previewed here.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

Register for this workshop at Eventbrite.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Feb
28
Wed
Genomics Aotearoa Training: Introduction to R (online) @ Online
Feb 28 @ 10:00 am – 4:00 pm
Introduction to R (online)
This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am-4:00pm NZT on Wednesday the 28th of February, 2024. It is for New Zealand researchers interested in learning R. This workshop functions as a prerequisite for the RNA-seq Data Analysis workshop, and the material provides a basis for many workflows in R.

Some of the topics covered in the workshop are:

  • An introduction to R and RStudio.
  • R basics: The R language, reading data into R, storing data as objects.
  • R packages.
  • Publication-quality data presentation using ggplot2.
  • Knitr: keep track of workflow and produce easy-to-follow reports of your work.
  • Where to get more help when you are ready to do more.

We assume the learner has no prior experience with the tools covered in the workshop. However, learners are expected to have some familiarity with biological concepts.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

The material for this workshop can be previewed here.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

Register for this workshop at Eventbrite.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz

Mar
6
Wed
Genomics Aotearoa Training: Long-Read Genome Assembly @ Online
Mar 6 @ 10:00 am – 4:00 pm
Long-Read Genome Assembly
This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am-4:00pm NZT on Wednesday the 6th of March, 2024. It is for New Zealand researchers interested in learning how to carry out genome assembly. This workshop will work through an entire assembly workflow, including data quality control, assembly, and assembly quality control.

This is an intermediate workshop, please check you meet the Prerequisites: Attendees must have introductory knowledge of Bash. We expect that you will either have completed our Introduction to bash workshop or have sufficient experience of your own.

Some of the topics covered in the workshop are:

  • Sequence data basics: HiFi and UltraLong read data specifics
  • Quality Control (QC) of the data: cleaning, read length filtering. Overview of phasing.
  • Assembly of a genome: Verkko and Hifiasm, comparison of the approaches.
  • Assembly QC: biological and technical assessments of the three Cs (contiguity, correctness, completeness).
  • Contiguity using gfastats
  • Correctness using Merqury
  • Completeness using asmgene
  • Assembly cleanup and genome annotation: checks for contamination, genome annotation using Liftoff, MashMap, and Minimap2.
  • Phased assemblies: the power of phased assemblies, with examples.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

The material for this workshop can be previewed here.
Participants must have their own laptops and plan to participate actively. You will require a working web browser.

Register for this workshop at Eventbrite.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Mar
8
Fri
Genomics Aotearoa Seminar Series: “Privacy and the World of DTC – Data Breaches are already happening” @ Online
Mar 8 @ 3:00 pm – 4:00 pm

Genomics Aotearoa is pleased to announce its Friday seminar series starts with Andelka Philips and Jan Charbonneau (University of Tasmania) on Friday, March 8 at 3pm, talking on “Privacy and the World of DTC – Data Breaches are already happening.” This is a follow-on from the very successful update Andelka gave our Genomics Aotearoa community last year on their genetics privacy survey.

Mar
20
Wed
Genomics Aotearoa TRAINING: RNA-seq Data Analysis @ Online
Mar 20 @ 10:00 am – 4:00 pm

RNA-seq Data Analysis

This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am-4:00pm NZT on the Wednesday 20th of March, 2024. It is for New Zealand researchers interested in RNA-seq data analysis. The focus of this workshop is to analyse RNA-seq data with the aim to identify differentially expressed genes.

Some of the topics covered in the workshop are:

  • Quality assessment
  • Trimming and filtering
  • Mapping and read counts
  • Differential expression analysis
  • Over-representation analysis

Who this workshop is for:
This is a beginner-friendly workshop which assumes you are familiar with the basics of R ( e.g., you can copy basic functions like head, tail, or colSums, you are aware of how R stores files as Objects) and bash (e.g., can change directory with cd command, make a new folder with mkdir command, view contents using less command). If you would like a refresher on R you can find one here. If you would like a refresher on bash you can find one here.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

The material for this workshop can be previewed here.
Participants must have their own laptops and plan to participate actively. You will require a working web browser.

Register for this workshop at Eventbrite.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Mar
22
Fri
Genomics Aotearoa Seminar Series: “Seeing evolution through a cladistic blindfold; the challenges of thinking about evolving lineages in a world of taxa.” @ Online
Mar 22 @ 10:00 am – 11:00 am

On Friday March 22 at 10 am we present another international speaker – Ronald Jenner, Principal Researcher at the Natural History Museum in London. Ronald researches the evolution of animal venoms and the conceptual history of phylogenetics, and is the author of Venom: The secrets of nature’s deadliest weapon (with Eivind Undheim) and Ancestors in evolutionary biology. Linear thinking about branching trees.”

Ronald will be speaking to us live on “Seeing evolution through a cladistic blindfold; the challenges of thinking about evolving lineages in a world of taxa.” Please let colleagues know, and note the 10am start time.