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Events

Upcoming events hosted by or involving Genetics Otago will be listed here. Please check back regularly for updates. A calendar of events that may be of interest to our members can be found at the bottom of this page and in the sidebar of other pages on this site, please note that this includes events hosted outside of Genetics Otago.

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Career Evening


Unsure what you can do with a Genetics, Biochemistry, Neuroscience or Microbiology background? Come along and hear about some avenues from local graduates and employers.

Who should attend? This event is open to all 300 and 400-level students in Genetics, Biochemistry, Neuroscience and Microbiology, as well as interested postgraduate students. The event has limited spaces, please RSVP by Wednesday 18th September to secure your place at this event.

What the event involves? The evening will begin at 6:00 pm with short presentations from the guest speakers, followed by an opportunity to chat and network with the speakers over pizza. Details of speakers will be published here once confirmed.

Date: 25th September 2024
Time: 6:00 pm – 8:00 pm
Location: BI.G13, Biochemistry Building

Programme
Careers Evening Programme_draft 

Please note that the order of speakers is subject to change

Registration
Registration for this event is via Career Hub, please use the button below to be redirected to the registration page.

Register Now

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Calendar of Events

The below is a calendar of events hosted by GO as well as events hosted by others that may be of interest to our members. If you have an event you would like us to include please contact us here.


Nov
23
Thu
Causal Inference workshop
Nov 23 – Nov 24 all-day

Causal Inference workshop – 23rd and 24th November 2023
This in-person, two-day Causal Inference workshop presented by Professor Michael Hudgens, Professor of Biostatistics and Chair of the Department of Biostatistics UNC-Chapel Hill, on the Thursday and Friday after the conference.
Target audience: Health researchers, epidemiologists, biostatisticians

Please refer to the attached posters for more details.
Causal Inference workshop Poster – Nov 2023

Kindly note, that you need to register for the Workshop. The early bird registration date has been extended to Sunday, 15th October 2023.

FNA Perth 2023 @ Kim Beazley Lecture Theatre
Nov 23 – Nov 24 all-day

The Symposium “Functional Nucleic Acids: From Laboratory to Targeted Molecular Therapy” will be held on 23-24 November 2023 at Murdoch University Campus in Perth, Australia.

Don’t miss your chance to hear from global and industry pioneers in RNA Therapeutics at the 3rd International Symposium on Functional Nucleic Acids 23-24 November 2023 at Murdoch University, Perth.

For just $275.00(AUD) or a heavily discounted student rate of $75.00(AUD) you can hear the latest updates from around the world and build your networks.

See the attachment for announcement of Keynote speakers with more exciting speakers still to come. Your name could appear alongside these industry greats when you submit your abstract now.

Abstract submission deadline:
5pm Monday 30 October: Oral or Poster presentation.
Submit an abstract to be considered for an oral or poster.
Guidelines and submission details can be found on the website.
Please Note: Registration is required to submit an abstract.

We look forward to seeing you in Perth in November – REGISTER NOW!

FNA Keynote speakers 2023[81]

Nov
27
Mon
Otago Bioinformatics Spring School @ University of Otago, Dunedin, New Zealand
Nov 27 – Dec 1 all-day

Hosted at the University of Otago, the Bioinformatics Spring School 2023 is a week long training event for researchers, supported by Genomics Aotearoa and the New Zealand eScience Infrastructure (NeSI). This event is primarily targeted at researchers and students based in Aotearoa New Zealand. International applications will be considered but will need to be able to attend in-person.

Expressions of interest applications are now open and will close midnight, Friday 29th September 2023.

Full Details: https://otagobioinformaticsspringschool.github.io/2023/

Feb
7
Wed
eResearch NZ 2024 conference @ Intercontinental Wellington.
Feb 7 – Feb 9 all-day

7-9 February 2024 | Wellington
eResearch NZ is the leading conference for the research community in Aotearoa, New Zealand. Each year, it brings people together to connect, converse, and share their latest ideas and innovations.

In 2024, we’ll be hosting the event in Wellington. Our strategic theme is He Moana Pukepuke e Ekengia e te Waka | Navigating an evolving eResearch landscape

Together with the research community, we’ll be showcasing new innovations, technology and research while helping each other navigate the challenges in our changing field.

eResearch NZ is a collaborative initiative organised by REANNZ, NeSI and Genomics Aotearoa with the support of the wider community.

Feb
14
Wed
Genomics Aotearoa Training: Introduction to the Command Line @ Online
Feb 14 @ 10:00 am – 4:00 pm
Introduction to the Command Line
This online workshop will be taught on Wednesday 14th of February, 2024 10:00am-4:00pm NZT and is for New Zealand researchers interested in learning to use the command line. The focus of this workshop is on working with the command line, also called The Shell.

Some of the topics covered in this workshop are:

  • An introduction to the Shell, including why this is such a powerful tool.
  • File navigation, how to navigate directories.
  • How to interact with files – copy or rename files in bulk. Automation reduces user error and saves time.
  • Redirection: passing information from one command to another to create useful chains of commands.
  • Writing scripts which can be executed to quickly and easily reproduce analyses.

This lesson assumes learner has no prior experience with the tools covered in the workshop.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants. The material for this workshop can be previewed here.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

Register for this workshop at Eventbrite.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Feb
28
Wed
Genomics Aotearoa Training: Introduction to R (online) @ Online
Feb 28 @ 10:00 am – 4:00 pm
Introduction to R (online)
This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am-4:00pm NZT on Wednesday the 28th of February, 2024. It is for New Zealand researchers interested in learning R. This workshop functions as a prerequisite for the RNA-seq Data Analysis workshop, and the material provides a basis for many workflows in R.

Some of the topics covered in the workshop are:

  • An introduction to R and RStudio.
  • R basics: The R language, reading data into R, storing data as objects.
  • R packages.
  • Publication-quality data presentation using ggplot2.
  • Knitr: keep track of workflow and produce easy-to-follow reports of your work.
  • Where to get more help when you are ready to do more.

We assume the learner has no prior experience with the tools covered in the workshop. However, learners are expected to have some familiarity with biological concepts.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

The material for this workshop can be previewed here.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

Register for this workshop at Eventbrite.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz

Mar
6
Wed
Genomics Aotearoa Training: Long-Read Genome Assembly @ Online
Mar 6 @ 10:00 am – 4:00 pm
Long-Read Genome Assembly
This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am-4:00pm NZT on Wednesday the 6th of March, 2024. It is for New Zealand researchers interested in learning how to carry out genome assembly. This workshop will work through an entire assembly workflow, including data quality control, assembly, and assembly quality control.

This is an intermediate workshop, please check you meet the Prerequisites: Attendees must have introductory knowledge of Bash. We expect that you will either have completed our Introduction to bash workshop or have sufficient experience of your own.

Some of the topics covered in the workshop are:

  • Sequence data basics: HiFi and UltraLong read data specifics
  • Quality Control (QC) of the data: cleaning, read length filtering. Overview of phasing.
  • Assembly of a genome: Verkko and Hifiasm, comparison of the approaches.
  • Assembly QC: biological and technical assessments of the three Cs (contiguity, correctness, completeness).
  • Contiguity using gfastats
  • Correctness using Merqury
  • Completeness using asmgene
  • Assembly cleanup and genome annotation: checks for contamination, genome annotation using Liftoff, MashMap, and Minimap2.
  • Phased assemblies: the power of phased assemblies, with examples.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

The material for this workshop can be previewed here.
Participants must have their own laptops and plan to participate actively. You will require a working web browser.

Register for this workshop at Eventbrite.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Mar
8
Fri
Genomics Aotearoa Seminar Series: “Privacy and the World of DTC – Data Breaches are already happening” @ Online
Mar 8 @ 3:00 pm – 4:00 pm

Genomics Aotearoa is pleased to announce its Friday seminar series starts with Andelka Philips and Jan Charbonneau (University of Tasmania) on Friday, March 8 at 3pm, talking on “Privacy and the World of DTC – Data Breaches are already happening.” This is a follow-on from the very successful update Andelka gave our Genomics Aotearoa community last year on their genetics privacy survey.

Mar
20
Wed
Genomics Aotearoa TRAINING: RNA-seq Data Analysis @ Online
Mar 20 @ 10:00 am – 4:00 pm

RNA-seq Data Analysis

This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am-4:00pm NZT on the Wednesday 20th of March, 2024. It is for New Zealand researchers interested in RNA-seq data analysis. The focus of this workshop is to analyse RNA-seq data with the aim to identify differentially expressed genes.

Some of the topics covered in the workshop are:

  • Quality assessment
  • Trimming and filtering
  • Mapping and read counts
  • Differential expression analysis
  • Over-representation analysis

Who this workshop is for:
This is a beginner-friendly workshop which assumes you are familiar with the basics of R ( e.g., you can copy basic functions like head, tail, or colSums, you are aware of how R stores files as Objects) and bash (e.g., can change directory with cd command, make a new folder with mkdir command, view contents using less command). If you would like a refresher on R you can find one here. If you would like a refresher on bash you can find one here.

Setup
This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

The material for this workshop can be previewed here.
Participants must have their own laptops and plan to participate actively. You will require a working web browser.

Register for this workshop at Eventbrite.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Mar
22
Fri
Genomics Aotearoa Seminar Series: “Seeing evolution through a cladistic blindfold; the challenges of thinking about evolving lineages in a world of taxa.” @ Online
Mar 22 @ 10:00 am – 11:00 am

On Friday March 22 at 10 am we present another international speaker – Ronald Jenner, Principal Researcher at the Natural History Museum in London. Ronald researches the evolution of animal venoms and the conceptual history of phylogenetics, and is the author of Venom: The secrets of nature’s deadliest weapon (with Eivind Undheim) and Ancestors in evolutionary biology. Linear thinking about branching trees.”

Ronald will be speaking to us live on “Seeing evolution through a cladistic blindfold; the challenges of thinking about evolving lineages in a world of taxa.” Please let colleagues know, and note the 10am start time.