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Events

Upcoming events hosted by or involving Genetics Otago will be listed here. Please check back regularly for updates. A calendar of events that may be of interest to our members can be found at the bottom of this page and in the sidebar of other pages on this site, please note that this includes events hosted outside of Genetics Otago.

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GO Annual Symposium


Genetics Otago has partnered with the Australasian Epigenetics Alliance to bring the AEpiA Conference to NZ for the first time, held 1st – 5th December 2024. The GO Symposium will begin with a shared session with the AEpiA delegates on the morning of the 5th of December and will then continue in its regular format for the remainder of the day.

As usual, the Symposium will highlight the fantastic research being done by GO members from around the country through presentations, posters and awards.

Date: Thursday 5th December 2024
Time: 9:00 am – 5:00 pm
Venue: Hutton Theatre, Otago Museum (for those joining from Christchurch and Wellington – a venue will be confirmed soon).

Programme
A draft programme will be available here soon.

Registration
Registration for this event is now open via the button below.

Abstract submission is part of the registration process, all abstracts must be submitted by no later than 5:00 pm on the 14th of November. Registration will close at 12:00 noon on Wednesday 20th November. Please keep the link provided at the end of your registration to make changes to your responses up until the closing date.

Registration Fee
Due to budget constraints, we will be charging a $50 per person registration fee for all attendees to subsidise the costs associated with the Symposium. We have received confirmation that this registration fee can be paid from S accounts, and if you are in a position to make a donation on top of this fee, we would gladly receive it. However, we do not want the payment to be a barrier to attendance, so if you are not in a position to make a payment, please contact us go@otago.ac.nz.

Payment Methods
Payments from an S account (or other University account) can be journaled to Genetics Otago account PL.10.9277.12.R.LH.2541 via your finance associate. Please include the surname(s) of the registrants that the payment covers in the narration.

If you need to make payment using funds from outside the University this can be arranged via the Cashier’s Office. Please contact us for details (go@otago.ac.nz).

Register Now

Awards
The Annual Genetics Otago Awards including The Genetics Otago Award, Outstanding Mentor Awards, Student Supervisor Award, Publication Awards, Poster Awards and Science Communication Prize will be presented at the conclusion of the Symposium and nominations for these are now open.

Award nominations close at 12:00 noon on Wednesday 20th November (except for Poster and Science Communication Awards which are at 5 pm 14th of November) and should be submitted by email to go@otago.ac.nz.

Full details of the awards can be found here: Award Details.

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Calendar of Events

The below is a calendar of events hosted by GO as well as events hosted by others that may be of interest to our members. If you have an event you would like us to include please contact us here.


Aug
7
Wed
Genomics Aotearoa Workshop: Intermediate Shell for Bioinformatics @ Online
Aug 7 @ 10:00 am – 4:00 pm

This online workshop is hosted by Genomics Aotearoa and NeSI. The workshop will be taught from 10:00am-4:00pm NZT on the 7th of August 2024 and is for New Zealand researchers interested in progressing their abilities with Shell.

This workshop will cover:

– An overview of the Shell, UNIX and Linux.

– Downloading data from a remote source and checking data integrity.

– Recap navigating files and directories, and commands used in routine tasks.

– Inspecting and manipulating data, part 1 (the head, less, grep, and sed commands).

– Inspecting and manipulating data, part 2 (using awk and bioawk to process text).

– Automating file processing.

– Challenges: solve example molecular biology problems using shell scripts.

This workshop assumes some familiarity with Shell. You will need to be able to do the following tasks via command line:

– Navigating files and directories.

– An understanding on full versus relative paths.

– Working with files and directories (examining files, creating, copying, moving and removing).

– Use a command line-based text editor such as nano.

And have a basic understanding of:

– File/directory permission in Linux.

– For loops (preferred, not required).

If you lack the above skills, you can use these sites as a refresher:

– Introduction to Command Line Carpentries lesson https://datacarpentry.org/shell-genomics/

Setup

This is a fully online, hands-on workshop. The workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

You can view the workshop material, including the objectives and content here.

Participants must have their own machine to work on and plan to participate actively in the workshop. You will require a working web browser.

Aug
19
Mon
Genemappers 2024 @ Te Pae Convention Centre
Aug 19 – Aug 21 all-day

Kia ora! It is our great pleasure to invite you to the 17th GeneMappers Conference, to be held in Christchurch from Monday 19th to Wednesday 21st August. We are excited to host this meeting outside Australia for the first time, and aim to retain the ethos and build on the energy of previous meetings.

GeneMappers embraces all aspects of human genetics, genomics, and bioinformatics. It provides a forum for presentation and discussion of new research ideas and technologies, and is always a superb networking forum for scientists at all career stages.

The 2024 meeting will be held at the brand new Te Pae Convention Centre, in the heart of Christchurch city. We do hope you will take extra time to enjoy the city and its environs, and perhaps combine your visit with a winter break in the beautiful South Island (Te Waipounamu).

We look forward to welcoming you to Christchurch in August 2024!

Co-convenors

Martin Kennedy and Anna Pilbrow
University of Otago, Christchurch

Aug
21
Wed
Genomics Aotearoa WORKSHOP: Introduction to Bash Scripting and HPC Job Scheduler @ Online
Aug 21 @ 10:00 am – 4:00 pm

This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught from 10:00am-4:00pm NZT on Wednesday the 21st of August, 2024, and is for New Zealand researchers interested in learning to write scripts and submit jobs to an HPC using a scheduler. This workshop is an excellent follow-up for everyone who has recently completed the Introduction to R and Introduction to Bash workshops, although these are not strictly prerequisites. You are expected to have some knowledge of basic terminal commands.

Some of the topics covered in the workshop are:

– Designing a variant calling workflow.

– Automating a workflow.

– An introduction to HPC.

– Working with job scheduler.

Setup

This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

The material for this workshop can be previewed here.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Sep
3
Tue
5th Annual Metagenomics Summer (Spring) School @ University of Auckland
Sep 3 – Sep 6 all-day
Metagenomics Summer School
The Environmental Microbiomes team at Genomics Aotearoa is hosting the 5th annual Metagenomics Summer (Spring) School.

This practical, hands-on workshop focuses on prokaryotic metagenomics and will be conducted in person at the University of Auckland, City Campus, Auckland, from September 3 to 6, 2024.

The workshop aims to guide participants through the process of analysing metagenomic short-read sequence data, including metagenomic read sequence processing, generation of curated metagenome-assembled genomes, and downstream data analyses and visualisation in R.

For a brief overview, browse course materials from the previous workshop here.

Examples of topics covered are:

  • Introduction to Bash shell and scripting (pre-workshop session)
  • Pragmatic considerations for planning experiments/sampling excursions (e.g., how much sequence data do I need? What are the approaches to analysing the data I have?)
  • Best practices in handling and processing metagenomic data
  • Metagenome assembly, binning and annotation
  • Viral genome prediction from metagenomic assemblies

We invite researchers of all bioinformatics skill levels and career stages to register their interest here. Registrations close at 2pm on Friday, June 7.

Email Boey at jian.sheng.boey@auckland.ac.nz if you have any enquiries.

Sep
25
Wed
Career Evening @ Biochemistry Seminar room G13
Sep 25 @ 6:00 pm – 8:00 pm

Career Evening


Unsure what you can do with a Genetics, Biochemistry, Microbiology or Neuroscience background? Come along and hear about some avenues from local graduates and employers.

Who should attend? This event is open to all 300 and 400-level students in Genetics, Biochemistry, Neuroscience and Microbiology, as well as interested postgraduate students. The event has limited spaces, please RSVP by Wednesday 18th September to secure your place at this event.

What the event involves? The evening will begin at 6:00 pm with short presentations from the guest speakers, followed by an opportunity to chat and network with the speakers over pizza. Details of speakers will be published here once confirmed.

Date: 25th September 2024
Time: 6:00 pm – 8:00 pm
Location: BI.G13, Biochemistry Building

Career Evening Poster

Oct
8
Tue
Genomics Aotearoa: RNA-seq Data Analysis Workshop @ Online Event
Oct 8 @ 9:00 am – 1:00 pm

This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught over two mornings from 9:00am-1:00pm NZT on Tuesday 8th October and Wednesday 9th October, 2024. It is for New Zealand researchers interested in RNA-seq data analysis.

The focus of this workshop is to analyse RNA-seq data with the aim to identify differentially expressed genes.

During Day 1 we will cover quality control and read cleaning, alignment and quantification methods, and carry out an exploratory analysis of an example data set.

During Day 2 we will work through two methods which take unique statistical approaches to identifying differentially expressed genes. We will then look at over-representation analysis, a popular method to derive biological meaning from a list of differentially expressed genes.

Who this workshop is for

This is a beginner-friendly workshop which assumes you are familiar with the basics of R ( e.g., you can copy basic functions like head, tail, or colSums, you are aware of how R stores files as Objects) and bash (e.g., can change directory with cd command, make a new folder with mkdir command, view contents using less command). If you would like a refresher on R you can find one here. If you would like a refresher on bash you can find one here.

Setup

This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Oct
9
Wed
Genomics Aotearoa: RNA-seq Data Analysis Workshop @ Online Event
Oct 9 @ 9:00 am – 1:00 pm

This online workshop is delivered by Genomics Aotearoa and NeSI, and will be taught over two mornings from 9:00am-1:00pm NZT on Tuesday 8th October and Wednesday 9th October, 2024. It is for New Zealand researchers interested in RNA-seq data analysis.

The focus of this workshop is to analyse RNA-seq data with the aim to identify differentially expressed genes.

During Day 1 we will cover quality control and read cleaning, alignment and quantification methods, and carry out an exploratory analysis of an example data set.

During Day 2 we will work through two methods which take unique statistical approaches to identifying differentially expressed genes. We will then look at over-representation analysis, a popular method to derive biological meaning from a list of differentially expressed genes.

Who this workshop is for

This is a beginner-friendly workshop which assumes you are familiar with the basics of R ( e.g., you can copy basic functions like head, tail, or colSums, you are aware of how R stores files as Objects) and bash (e.g., can change directory with cd command, make a new folder with mkdir command, view contents using less command). If you would like a refresher on R you can find one here. If you would like a refresher on bash you can find one here.

Setup

This is a fully online, hands-on workshop. This workshop material will be run on the NeSI High Performance Computing (HPC) platforms – there is no need to install any software for this workshop. Instructions on how to access the NeSI HPC service will be sent out with the confirmation letter to registrants.

Participants must have their own laptops and plan to participate actively. You will require a working web browser.

If you have any questions about these workshops, including whether they are suitable for you, please contact tyler.mcinnes@otago.ac.nz.

Nov
18
Mon
Otago Bioinformatics Spring School 2024 @ University of Otago, Dunedin, New Zealand
Nov 18 @ 9:30 am – Nov 22 @ 4:30 pm

Genomics Aotearoa and NeSI are proud supporters of the Bioinformatics Spring School 2024, being organised by the University of Otago to run from Monday 18th – Friday 22nd November 2024.

Spring School is an intensive, one-week course tackling the basics of BASH (a command line language) and an introduction to the R programming language, working with Genomic DNA, RNA-seq data analysis, eDNA, and long-read genome assembly. During the workshops you will also be introduced to working on high performance computers and exposed to good bioinformatics practices.

This in person event is excellent experience for someone starting their bioinformatics journey and will provide a general introduction as well as touching on some of the common workflows used in genomic data analysis.

Expressions of interest applications close midnight Friday 29th September.

To know more about the event visit Otago Bioinformatics Spring School 2024.

Submit your interest using this google form.

Contact Dr Murray Cadzow, University of Otago, for further information: murray.cadzow@otago.ac.nz